{
"cells": [
{
"cell_type": "markdown",
"id": "cd0a3db2",
"metadata": {},
"source": [
"# European Prospective Investigation into Cancer and Nutrition - Norfolk (EPIC-N)"
]
},
{
"cell_type": "code",
"execution_count": 1,
"id": "3620e7c3",
"metadata": {
"execution": {
"iopub.execute_input": "2025-07-28T18:37:45.607754Z",
"iopub.status.busy": "2025-07-28T18:37:45.606740Z",
"iopub.status.idle": "2025-07-28T18:37:50.502100Z",
"shell.execute_reply": "2025-07-28T18:37:50.500082Z"
},
"tags": [
"remove-input"
]
},
"outputs": [
{
"data": {
"text/markdown": [
">Last modified: 28 Jul 2025"
],
"text/plain": [
"<IPython.core.display.Markdown object>"
]
},
"metadata": {},
"output_type": "display_data"
}
],
"source": [
"\n",
"import sys\n",
"import os\n",
"sys.path.append(os.path.abspath('../../scripts/'))\n",
"from data_doc_helper import LPSSource as SS, last_modified\n",
"ss = SS(\"EPICN\")\n",
"last_modified()\n"
]
},
{
"cell_type": "markdown",
"id": "b279224f",
"metadata": {},
"source": [
"## 1. Summary"
]
},
{
"cell_type": "code",
"execution_count": 2,
"id": "0f55d79f",
"metadata": {
"execution": {
"iopub.execute_input": "2025-07-28T18:37:50.510104Z",
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"shell.execute_reply": "2025-07-28T18:37:50.519361Z"
},
"tags": [
"remove-input"
]
},
"outputs": [
{
"data": {
"text/markdown": [
"EPIC-Norfolk is part of the European Prospective Investigation into Cancer (EPIC), a large-scale project that studies populations across Europe to investigate the relationships between diet, nutrition, lifestyle and environmental factors, and the incidence of cancer and other chronic diseases. "
],
"text/plain": [
"<IPython.core.display.Markdown object>"
]
},
"metadata": {},
"output_type": "display_data"
}
],
"source": [
"ss.summary()"
]
},
{
"cell_type": "code",
"execution_count": 3,
"id": "abaae444",
"metadata": {
"execution": {
"iopub.execute_input": "2025-07-28T18:37:50.527440Z",
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"iopub.status.idle": "2025-07-28T18:37:52.024054Z",
"shell.execute_reply": "2025-07-28T18:37:52.022526Z"
},
"tags": [
"remove-input"
]
},
"outputs": [
{
"data": {
"text/html": [
"<style type=\"text/css\">\n",
"#T_d1f80 th {\n",
" text-align: left;\n",
"}\n",
"#T_d1f80_row0_col0, #T_d1f80_row0_col1, #T_d1f80_row1_col0, #T_d1f80_row1_col1, #T_d1f80_row2_col0, #T_d1f80_row2_col1, #T_d1f80_row3_col0, #T_d1f80_row3_col1, #T_d1f80_row4_col0, #T_d1f80_row4_col1, #T_d1f80_row5_col0, #T_d1f80_row5_col1, #T_d1f80_row6_col0, #T_d1f80_row6_col1, #T_d1f80_row7_col0, #T_d1f80_row7_col1, #T_d1f80_row8_col0, #T_d1f80_row8_col1, #T_d1f80_row9_col0, #T_d1f80_row9_col1, #T_d1f80_row10_col0, #T_d1f80_row10_col1, #T_d1f80_row11_col0, #T_d1f80_row11_col1, #T_d1f80_row12_col0, #T_d1f80_row12_col1 {\n",
" text-align: left;\n",
"}\n",
"</style>\n",
"<table id=\"T_d1f80\" style=\"font-size: 14px\">\n",
" <thead>\n",
" <tr>\n",
" <th id=\"T_d1f80_level0_col0\" class=\"col_heading level0 col0\" >Series Descriptor</th>\n",
" <th id=\"T_d1f80_level0_col1\" class=\"col_heading level0 col1\" >Series-specific Information</th>\n",
" </tr>\n",
" </thead>\n",
" <tbody>\n",
" <tr>\n",
" <td id=\"T_d1f80_row0_col0\" class=\"data row0 col0\" >Citation (APA)</td>\n",
" <td id=\"T_d1f80_row0_col1\" class=\"data row0 col1\" >University of Cambridge, MRC Epidemiology Unit. (2021). <i>European Prospective Investigation into Cancer - Norfolk (EPIC-N).</i> UK Longitudinal Linkage Collaboration (UK LLC). <a href=\"https://doi.org/10.71760/ukllc-series-00006\" rel=\"noopener noreferrer\" target=\"_blank\">https://doi.org/10.71760/ukllc-series-00006</a></td>\n",
" </tr>\n",
" <tr>\n",
" <td id=\"T_d1f80_row1_col0\" class=\"data row1 col0\" >Download Citation</td>\n",
" <td id=\"T_d1f80_row1_col1\" class=\"data row1 col1\" > <a href=\"https://api.datacite.org/application/vnd.citationstyles.csl+json/10.71760/ukllc-series-00006\" rel=\"noopener noreferrer\" target=\"_blank\">Citeproc JSON</a> <a href=\"https://api.datacite.org/application/x-bibtex/10.71760/ukllc-series-00006\" rel=\"noopener noreferrer\" target=\"_blank\">BibTeX</a> <a href=\"https://api.datacite.org/application/x-research-info-systems/10.71760/ukllc-series-00006\" rel=\"noopener noreferrer\" target=\"_blank\">RIS</a></td>\n",
" </tr>\n",
" <tr>\n",
" <td id=\"T_d1f80_row2_col0\" class=\"data row2 col0\" >Owner</td>\n",
" <td id=\"T_d1f80_row2_col1\" class=\"data row2 col1\" >University of Cambridge</td>\n",
" </tr>\n",
" <tr>\n",
" <td id=\"T_d1f80_row3_col0\" class=\"data row3 col0\" >Cohort</td>\n",
" <td id=\"T_d1f80_row3_col1\" class=\"data row3 col1\" >30000</td>\n",
" </tr>\n",
" <tr>\n",
" <td id=\"T_d1f80_row4_col0\" class=\"data row4 col0\" >Age at Recruitment</td>\n",
" <td id=\"T_d1f80_row4_col1\" class=\"data row4 col1\" >40-79 years</td>\n",
" </tr>\n",
" <tr>\n",
" <td id=\"T_d1f80_row5_col0\" class=\"data row5 col0\" >Geographical Coverage - Nations</td>\n",
" <td id=\"T_d1f80_row5_col1\" class=\"data row5 col1\" >England</td>\n",
" </tr>\n",
" <tr>\n",
" <td id=\"T_d1f80_row6_col0\" class=\"data row6 col0\" >Geographical Coverage - Regions</td>\n",
" <td id=\"T_d1f80_row6_col1\" class=\"data row6 col1\" >Norfolk</td>\n",
" </tr>\n",
" <tr>\n",
" <td id=\"T_d1f80_row7_col0\" class=\"data row7 col0\" >Start Date</td>\n",
" <td id=\"T_d1f80_row7_col1\" class=\"data row7 col1\" >1993</td>\n",
" </tr>\n",
" <tr>\n",
" <td id=\"T_d1f80_row8_col0\" class=\"data row8 col0\" >Permitted Linkages</td>\n",
" <td id=\"T_d1f80_row8_col1\" class=\"data row8 col1\" >See <a href=\"https://guidebook.ukllc.ac.uk/docs/lps/linkages/lps_linkages\" rel=\"noopener noreferrer\" target=\"_blank\">here</a></td>\n",
" </tr>\n",
" <tr>\n",
" <td id=\"T_d1f80_row9_col0\" class=\"data row9 col0\" >Inclusion in Linkages</td>\n",
" <td id=\"T_d1f80_row9_col1\" class=\"data row9 col1\" >Consent and section 251</td>\n",
" </tr>\n",
" <tr>\n",
" <td id=\"T_d1f80_row10_col0\" class=\"data row10 col0\" >Cohort Profile</td>\n",
" <td id=\"T_d1f80_row10_col1\" class=\"data row10 col1\" > <a href=\"https://doi.org/10.1093/ije/dyt086\" rel=\"noopener noreferrer\" target=\"_blank\">10.1093/ije/dyt086</a></td>\n",
" </tr>\n",
" <tr>\n",
" <td id=\"T_d1f80_row11_col0\" class=\"data row11 col0\" >LPS Homepage</td>\n",
" <td id=\"T_d1f80_row11_col1\" class=\"data row11 col1\" ><p><a href=\"https://www.epic-norfolk.org.uk/\">epic-norfolk</a></p></td>\n",
" </tr>\n",
" <tr>\n",
" <td id=\"T_d1f80_row12_col0\" class=\"data row12 col0\" >Build a Data Request</td>\n",
" <td id=\"T_d1f80_row12_col1\" class=\"data row12 col1\" > <a href=\"https://explore.ukllc.ac.uk/\" rel=\"noopener noreferrer\" target=\"_blank\">https://explore.ukllc.ac.uk/</a></td>\n",
" </tr>\n",
" </tbody>\n",
"</table>\n"
],
"text/plain": [
"<pandas.io.formats.style.Styler at 0x1de402dbb60>"
]
},
"execution_count": 3,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"ss.info_table()"
]
},
{
"cell_type": "markdown",
"id": "657b90e3",
"metadata": {},
"source": [
"## 2. Linkage Rates"
]
},
{
"cell_type": "code",
"execution_count": 4,
"id": "cdd36db1",
"metadata": {
"execution": {
"iopub.execute_input": "2025-07-28T18:37:52.031308Z",
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"iopub.status.idle": "2025-07-28T18:37:52.582339Z",
"shell.execute_reply": "2025-07-28T18:37:52.579319Z"
},
"tags": [
"remove-input"
]
},
"outputs": [
{
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" const CLASS_NAME = 'output_bokeh rendered_html';\n",
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" const cmd_clean = \"from bokeh.io.state import curstate; print(curstate().uuid_to_server['\" + server_id + \"'].get_sessions()[0].document.roots[0]._id)\";\n",
" cell.notebook.kernel.execute(cmd_clean, {\n",
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" const id = msg.content.text.trim()\n",
" drop(id)\n",
" }\n",
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" const cmd_destroy = \"import bokeh.io.notebook as ion; ion.destroy_server('\" + server_id + \"')\";\n",
" cell.notebook.kernel.execute(cmd_destroy);\n",
" }\n",
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"\n",
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" load_libs(css_urls, js_urls, function() {\n",
" console.debug(\"Bokeh: BokehJS plotting callback run at\", now());\n",
" run_inline_js();\n",
" });\n",
" }\n",
"}(window));"
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"## 3. Documentation"
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